Pseudomonas aeruginosa PA7, PSPA7_2981 (ptxS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0045892 negative regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA2259
 ECO:0000249
sequence similarity evidence used in automatic assertion		 22844393
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00356
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PA7 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.260.40 - IPR010982 Lambda repressor-like, DNA-binding domain superfamily 7 69 2.3E-18
SUPERFAMILY SSF47413 lambda repressor-like DNA-binding domains IPR010982 Lambda repressor-like, DNA-binding domain superfamily 11 70 7.59E-14
SMART SM00354 laci3 IPR000843 LacI-type HTH domain 11 82 2.2E-26
PANTHER PTHR30146 LACI-RELATED TRANSCRIPTIONAL REPRESSOR - - 12 337 1.9E-74
Pfam PF00356 Bacterial regulatory proteins, lacI family IPR000843 LacI-type HTH domain 13 59 2.3E-13
CDD cd01392 HTH_LacI IPR000843 LacI-type HTH domain 16 67 8.65182E-15
SUPERFAMILY SSF53822 Periplasmic binding protein-like I IPR028082 Periplasmic binding protein-like I 69 330 2.55E-60
Gene3D G3DSA:3.40.50.2300 - - - 70 159 9.6E-21
CDD cd06283 PBP1_RegR_EndR_KdgR-like - - 72 333 5.83086E-108
Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IPR001761 Periplasmic binding protein/LacI sugar binding domain 73 331 3.7E-21
Gene3D G3DSA:3.40.50.2300 - - - 164 338 1.7E-28
FunFam G3DSA:3.40.50.2300:FF:000339 Transcriptional regulator PtxS - - 164 338 2.5E-110

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.