Pseudomonas chlororaphis EA105, NZ35_RS17920 (ampC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGCCTCGGCAACAGCCAACCCACGGTGAAGGTGCCGACCGCGCCGACAGTCAACATTTCCCGGTACTGTCCGCCAGCGAGGCGTTCGAGAATCTGCGC GATGTGATCGAACGAGGTGCTCAGCACCGGCAACAGGGTTTCGCCTTCGCTGGTCAGCATCAGCCCACGGGGCAGGCGTTTGAACAGGGTAACGTTGAGT TGCGCCTCAAGGCTTTTCACCTGATGGCTGACAGCAGCCTGGGTGACGCACAGCTCCACGGCCGCGCGAGTGAAGCTCAAATGACGTGCGGAGGCTTCAA AGGCGCGCAGTGCGTTAAGCGGCAATTGCGGTCGAATCATGCCCAGTCCCAAATTTTTCTAATGGCTCGTGCGAGTTTTCGTCGTTTGTCGATTGGCGTC GCGCTGACTAGATTGGCGGCGCTGATCAGTCGCCCAACGAAGAAATCGCCCGCAGTGTAGCGGGATAACACTACCAACACTCATGGAGAGTGGTTCATTC
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| DNA Sequence for Gene |
>NZ35_RS17920
|ampC
ATGCCATCCATTCAATCGAGCAAAGTCATTTCCTGCGCTGCTTTCGGCCTGTTTTTGGGCGCCACATCAAGTTTCGCCGCTGCGCCCGACGCTGTGCAGT TGCAAGCTTTGGTCAACGACGCGGTAACGCCTGTGATGCAGCAGCAGAACGTTCCTGGCCTCACCGTAGCGCTGACCGTTAACGGCAAGGCACATTACTT TAACTACGGCGTCGCCAGCAAAGACACCGGGGAAAAAGTCAGCGAAAACACCCTGTTCGAAATCGGCTCTGTGAGCAAAACCTTCACCGCCACCCTCGCC GGTTACGCCCACGCGACTGACAAACTCGATCTGTCGACCAAGGCCAGTCAGCTCTGGCCTGAATTGAAAGGCAGCGCCTTCGACACTATCAGCGTGCTGC AACTGGGCACCTACAGCGCCGGCGGTTTGCCGCTGCAATTCCCGGACAACGCGGATTCGTCTGACAAGATGCTCGGCTATTTCCAGCAGTGGAAACCGGT TTATCCGGCAGGCAGCCATCGCCAGTACTCCAACCCGAGTTTGGGTTTGTTCGGTTATCTGGCCGCGAAAAGCCTCGGCCAGCCTTTCGATCAGGCTATG ACGCAAACCCTGCTGCCGAAACTCGGTTTGCAGCACACCTACCTCAGTGTGCCTGCCGCGCAAATGGACCTGTATGCGCAGGGCTATGACAAGAACGGCA AACCGGTGCGCGTCACGCCCGGTGCGCTTGACTCACAGGCCTATGGCGTGAAAACCAGCGCGGTGGACATGCTGCGTTACGTGCAGGCCAACCTGAAGCC TGAAACGCTGGAAGCTGTACTGCAAAAAACTATCGCCAACACCCACACCGGTTACTACACCGTCGGCGACATGACTCAAGGTTTGGGTTGGGAGATGTAC CGTTACCCGATCAGTCTTGAGCGTTTGCTGGCGGGCAACTCGACGGAGATGGCCATGCAGGCGCACAAGGTGCAGTGGCTGAATCCGCCGCGACCGCAAC CGGATGACGTGCTGATCAACAAGACTGGCTCTACCGGTGGTTTCGGGACTTATGTGGCGTTTGTGCCGAGCAAGGACATTGGCATCGTGATCATGGCTAA CAAGAACTTTCCGATTCCTGAGCGGGTGAAAATCGCCCATACAATTCTCAGCGCTGTCGCTGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAATCAAAAGATCGCAGCCTGCGGCAGCTCCTACAAGATCGGGTTTCCACTCGGTCAATGTAGGAGCTGCCGCAGGCTGCGATCTTTTGTCTTTAAAGCT GCGCCTGCAACTTCCAGCCGATGACATCCATCAAGTCGCAACTGTCCCGCAACGGAATCGCCATCACCCGGGCGAAATCCTGCAGCAGCAAAGCGTCTTG GCCCTTGCCATCCCCCAGCGCCAGGGTCTCCATCAATTGCGTCACACAGCACAAACGATAAGCCGCCGTGCCATGCAGCACATCTACCGGTGCTTCGCGG TCGATCAGCAGAGCGGGAATCTTGCAGTCAATCCCGGTCAGCGGAATGTATCTCGTCATGTTTGAACCTCCCTGTTCAATGTGGCGTCGCCGCCGGTGGA TCGAGATTGTCCAGCGCACGGTTAACCAGCAACTCACCGAGCACAGCCAACTGCTGAATCGACAAGGCGAGACTGCGCGCTGAACCTTGCAATTCTGCGG
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| Amino Acid Sequence |
>beta-lactamase/D-alanine carboxypeptidase
MPSIQSSKVISCAAFGLFLGATSSFAAAPDAVQLQALVNDAVTPVMQQQNVPGLTVALTVNGKAHYFNYGVASKDTGEKVSENTLFEIGSVSKTFTATLA GYAHATDKLDLSTKASQLWPELKGSAFDTISVLQLGTYSAGGLPLQFPDNADSSDKMLGYFQQWKPVYPAGSHRQYSNPSLGLFGYLAAKSLGQPFDQAM TQTLLPKLGLQHTYLSVPAAQMDLYAQGYDKNGKPVRVTPGALDSQAYGVKTSAVDMLRYVQANLKPETLEAVLQKTIANTHTGYYTVGDMTQGLGWEMY RYPISLERLLAGNSTEMAMQAHKVQWLNPPRPQPDDVLINKTGSTGGFGTYVAFVPSKDIGIVIMANKNFPIPERVKIAHTILSAVAD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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