Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CCGTCGCCTCGTCGATGTGGAACCGCTGCGGGTGTTTTTCGCCGGTCAGAACCTGTTGGTGTCGACCCAGGCCCAGACCATCGCCCAGGTGCAGTCGTTG AGCCGCAACCTGTCGATCGTGTTTTGGATGATTGGCGGTTTGGCGGTGGCGGGTGCGTTTGCGGCGATCTTTGCCGGGGCCCTCGCGGCTGTGGCGCGCA AGCGTCGGGAATTGTCGGTGTTGCGCCTGTTGGGGTTCTCGACGGGTGGGCTGTTGCTGTTTGTGGTGGTGCAGGCGCTGTACAGCGCAGGTTTTGCTGC CGTGCTCAGTGCCGGCCTGTATGGCGTGGCCGAGGCGGCGTTGAATCAGTTATTTGTGCAGGTGCCGGGCGAATACGCCAGCCATCTGTTGGCGCGTCAT TACGGCCTGGCCCTGGTTGCAGTCATGGGCGTCAGCGCCGTGGCGGCGGCCTGTGGTGGTTGGCGAGTGGCGCGGATCCAGGCTTCTGAAGGAATCAGAG
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DNA Sequence for Gene |
>PFLU6007
ATGTATAAGTTACTGGGCGCCTGCGTGGCGCTGACCCTGGCCTCGATGGCCTGGGCCGATGAGGACTCTTTATTAGAGAAGCATGACAAGCTCGACAACC CCAAACCGTTGGAAGGCGACGTCAGCCTGCCGCTGCCGTGCGAAGGCAACATGGTGTTCCGCTACGCCTACGTGTTGGCCCAGGGCACCCTGGATGACCG CGAGATCAGCCTCGGCTACCCCTTTGCCGAAGGCGAGGCGGGCTATCAGCAGTCGTTTATTTCCGGCTACCGCCGTGACTTCATCAACGGCCAGTTCACC CTCAAGGACTTGCCCAAAGACTGGAACAAAGTCATCGCGCCGCTGATGCCGAAGACCGACGCCAAGACCCCGCTCAAGCCGATGCTGTACTTCATCGGCA AGTACGAAGTGACCGCCCGCCAGTACGCCCAAGTGATGTCGCAGGCACAGTCGCTGGCCAGCGGCGAACCGGCACCGGCGTGCGATGCGCCGACCGGCAT GGCCGGGCGCTTGCCCAAGGTCAAGCTGTCGCGCTTTGAAGCCGAGCGCTTTTCGGCGGTGTACAGCGCCTGGTTGATGAAATACCACCGTGAGTTGCTG CCGGTCAGCGGTCGTGGCTCGTCGGCGGATGACGGCGGCTTGGGCTTTGTGCGCCTGCCCACCGAAGTGGAGTGGGAGTTCGCCGCGCGCGGTGGCCATG CGGTCAGCCGCCAGGACCTGGAAGGGCGCCTGTTCCCCCGCCGCGTCGAAGGCAGTGACAGTGACGGCCCGCTCGGCGATTACGCCGTGTTCAACCAAGT GGCCGGCGGCACTGGCCAGGCTGCGCGCCTGATGCCCATCGGCACCAAATTGCCCAACCCGATCGGCCTGTTCGATGTGATCGGCAACGCGGCCGAAATG GTCCAGGAGTCCTTCCAATTGGTCCACGCGGGGCGCCGTCAGGGCACCTACGGCGGCTTTGTGGTCAAGGGCGGCAACTACCTGGAAGGCGAGGGCACGC TGTTCACCGGCATGCGCCGCGAGTACCCGCTGTTTGCCGCCGACGGCACCGAGCAAAGCAACGAGACCACGGGTTTCCGCGTGGCGATTGGTGCGCTGTC GGCACCGCGTTCGCGCTACAAGGAGCTGTTCGCGCAGTGGCAGAAAGAGGGCCGCCTGGCCTCGCTGACCGACGCCATCGACGACGCCCAGGACCCGACC AAGCGCCTGGACAGCATCATCGCCGCCAGTGTCGATCCCAAGCTGCAAGCTGAGCTGGGGCTGGTCAACGAAGAGCTCAAGCGCAATGTCTCGCTGATCG CCCAGCAACGTGAAGAAGCGGCGGGCAACCTGATTCAGTCGGCCGCGCTGGTGGCCGAGACCATCGCCAACTACAACATCCGCCTGGCCAACCTGCAGAA GAGTCGCCAGCAGGCCCTGGACAACAAGGACGAGGCCAGCGCGCAGCTGTTCGACATGGCCATCGCCAATGGTCGCAGTGCGCTTGATGGCGCGGTGGCG ATTTATATCGACAACCTGGCCACCGGCACGCGTTACACCGATGCGGTGATCCAGGCGCAGTTTCAACGGATCAAGGAAGAGTTGGATCGCAAGCCCGTGC TCGGCAAGAGCCTGGTGACGCGCGCAACACTGTTCGTTCGCCATGTCGGCAACTACCGCAAGCAACAGCGGGCCGACCCGGCGACGATCTTGAAGGAATT GCTCGCAGCGAGCGGTCAGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TCGCTGGCTGTATGGCGAGCTTGGAAGGGACTCAGGCGGCGGTGAGCCGTGCTGGGCAAGTCAAACTTAAACGAGAACACACTTATGCTTTTTTCCCGTA AGGCGGTTTCCAAGCGTCACTTGCTGCTGATCGCAGCCGGTTTCAGCACTGTGCTGACCGGTTGCGCCACGTCGCCGGCCTCCAAGGTCACGTCGAGCAC CAAGGTCGAGTACTACCCGAACTGCTACGAGCCGGTGCAGCACCTGCGCGCGACTGATTCGGACATGACCAAGTCGGTCGTGACCGGTGCGGCCATCGGC GCTGCCGGCGGTGCACTGCTGGGCGCCCTCACAGGCGACAAGGAAAAACGTGGCCGTAACGCCGCCATCGGTGCTGCAGGCGGCGCGTTGGCCGGCGGCG CGGCGGGTTACTACACCGAACGTCAGAAGCAGATCGCCGATGACAACCAGCGTATTGCCTCGTATGCGGCTGACGTGAACAAAAGCGCCTCTGACATCGA
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Amino Acid Sequence |
>putative ABC transporter substrate-binding protein
MYKLLGACVALTLASMAWADEDSLLEKHDKLDNPKPLEGDVSLPLPCEGNMVFRYAYVLAQGTLDDREISLGYPFAEGEAGYQQSFISGYRRDFINGQFT LKDLPKDWNKVIAPLMPKTDAKTPLKPMLYFIGKYEVTARQYAQVMSQAQSLASGEPAPACDAPTGMAGRLPKVKLSRFEAERFSAVYSAWLMKYHRELL PVSGRGSSADDGGLGFVRLPTEVEWEFAARGGHAVSRQDLEGRLFPRRVEGSDSDGPLGDYAVFNQVAGGTGQAARLMPIGTKLPNPIGLFDVIGNAAEM VQESFQLVHAGRRQGTYGGFVVKGGNYLEGEGTLFTGMRREYPLFAADGTEQSNETTGFRVAIGALSAPRSRYKELFAQWQKEGRLASLTDAIDDAQDPT KRLDSIIAASVDPKLQAELGLVNEELKRNVSLIAQQREEAAGNLIQSAALVAETIANYNIRLANLQKSRQQALDNKDEASAQLFDMAIANGRSALDGAVA IYIDNLATGTRYTDAVIQAQFQRIKEELDRKPVLGKSLVTRATLFVRHVGNYRKQQRADPATILKELLAASGQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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