Pseudomonas fluorescens SBW25, PFLU6007

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Sequence Data

Strain Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
CCGTCGCCTCGTCGATGTGGAACCGCTGCGGGTGTTTTTCGCCGGTCAGAACCTGTTGGTGTCGACCCAGGCCCAGACCATCGCCCAGGTGCAGTCGTTG AGCCGCAACCTGTCGATCGTGTTTTGGATGATTGGCGGTTTGGCGGTGGCGGGTGCGTTTGCGGCGATCTTTGCCGGGGCCCTCGCGGCTGTGGCGCGCA AGCGTCGGGAATTGTCGGTGTTGCGCCTGTTGGGGTTCTCGACGGGTGGGCTGTTGCTGTTTGTGGTGGTGCAGGCGCTGTACAGCGCAGGTTTTGCTGC CGTGCTCAGTGCCGGCCTGTATGGCGTGGCCGAGGCGGCGTTGAATCAGTTATTTGTGCAGGTGCCGGGCGAATACGCCAGCCATCTGTTGGCGCGTCAT TACGGCCTGGCCCTGGTTGCAGTCATGGGCGTCAGCGCCGTGGCGGCGGCCTGTGGTGGTTGGCGAGTGGCGCGGATCCAGGCTTCTGAAGGAATCAGAG
DNA Sequence for Gene
>PFLU6007
ATGTATAAGTTACTGGGCGCCTGCGTGGCGCTGACCCTGGCCTCGATGGCCTGGGCCGATGAGGACTCTTTATTAGAGAAGCATGACAAGCTCGACAACC CCAAACCGTTGGAAGGCGACGTCAGCCTGCCGCTGCCGTGCGAAGGCAACATGGTGTTCCGCTACGCCTACGTGTTGGCCCAGGGCACCCTGGATGACCG CGAGATCAGCCTCGGCTACCCCTTTGCCGAAGGCGAGGCGGGCTATCAGCAGTCGTTTATTTCCGGCTACCGCCGTGACTTCATCAACGGCCAGTTCACC CTCAAGGACTTGCCCAAAGACTGGAACAAAGTCATCGCGCCGCTGATGCCGAAGACCGACGCCAAGACCCCGCTCAAGCCGATGCTGTACTTCATCGGCA AGTACGAAGTGACCGCCCGCCAGTACGCCCAAGTGATGTCGCAGGCACAGTCGCTGGCCAGCGGCGAACCGGCACCGGCGTGCGATGCGCCGACCGGCAT GGCCGGGCGCTTGCCCAAGGTCAAGCTGTCGCGCTTTGAAGCCGAGCGCTTTTCGGCGGTGTACAGCGCCTGGTTGATGAAATACCACCGTGAGTTGCTG CCGGTCAGCGGTCGTGGCTCGTCGGCGGATGACGGCGGCTTGGGCTTTGTGCGCCTGCCCACCGAAGTGGAGTGGGAGTTCGCCGCGCGCGGTGGCCATG CGGTCAGCCGCCAGGACCTGGAAGGGCGCCTGTTCCCCCGCCGCGTCGAAGGCAGTGACAGTGACGGCCCGCTCGGCGATTACGCCGTGTTCAACCAAGT GGCCGGCGGCACTGGCCAGGCTGCGCGCCTGATGCCCATCGGCACCAAATTGCCCAACCCGATCGGCCTGTTCGATGTGATCGGCAACGCGGCCGAAATG GTCCAGGAGTCCTTCCAATTGGTCCACGCGGGGCGCCGTCAGGGCACCTACGGCGGCTTTGTGGTCAAGGGCGGCAACTACCTGGAAGGCGAGGGCACGC TGTTCACCGGCATGCGCCGCGAGTACCCGCTGTTTGCCGCCGACGGCACCGAGCAAAGCAACGAGACCACGGGTTTCCGCGTGGCGATTGGTGCGCTGTC GGCACCGCGTTCGCGCTACAAGGAGCTGTTCGCGCAGTGGCAGAAAGAGGGCCGCCTGGCCTCGCTGACCGACGCCATCGACGACGCCCAGGACCCGACC AAGCGCCTGGACAGCATCATCGCCGCCAGTGTCGATCCCAAGCTGCAAGCTGAGCTGGGGCTGGTCAACGAAGAGCTCAAGCGCAATGTCTCGCTGATCG CCCAGCAACGTGAAGAAGCGGCGGGCAACCTGATTCAGTCGGCCGCGCTGGTGGCCGAGACCATCGCCAACTACAACATCCGCCTGGCCAACCTGCAGAA GAGTCGCCAGCAGGCCCTGGACAACAAGGACGAGGCCAGCGCGCAGCTGTTCGACATGGCCATCGCCAATGGTCGCAGTGCGCTTGATGGCGCGGTGGCG ATTTATATCGACAACCTGGCCACCGGCACGCGTTACACCGATGCGGTGATCCAGGCGCAGTTTCAACGGATCAAGGAAGAGTTGGATCGCAAGCCCGTGC TCGGCAAGAGCCTGGTGACGCGCGCAACACTGTTCGTTCGCCATGTCGGCAACTACCGCAAGCAACAGCGGGCCGACCCGGCGACGATCTTGAAGGAATT GCTCGCAGCGAGCGGTCAGCGATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGCTGGCTGTATGGCGAGCTTGGAAGGGACTCAGGCGGCGGTGAGCCGTGCTGGGCAAGTCAAACTTAAACGAGAACACACTTATGCTTTTTTCCCGTA AGGCGGTTTCCAAGCGTCACTTGCTGCTGATCGCAGCCGGTTTCAGCACTGTGCTGACCGGTTGCGCCACGTCGCCGGCCTCCAAGGTCACGTCGAGCAC CAAGGTCGAGTACTACCCGAACTGCTACGAGCCGGTGCAGCACCTGCGCGCGACTGATTCGGACATGACCAAGTCGGTCGTGACCGGTGCGGCCATCGGC GCTGCCGGCGGTGCACTGCTGGGCGCCCTCACAGGCGACAAGGAAAAACGTGGCCGTAACGCCGCCATCGGTGCTGCAGGCGGCGCGTTGGCCGGCGGCG CGGCGGGTTACTACACCGAACGTCAGAAGCAGATCGCCGATGACAACCAGCGTATTGCCTCGTATGCGGCTGACGTGAACAAAAGCGCCTCTGACATCGA
Amino Acid Sequence
>putative ABC transporter substrate-binding protein
MYKLLGACVALTLASMAWADEDSLLEKHDKLDNPKPLEGDVSLPLPCEGNMVFRYAYVLAQGTLDDREISLGYPFAEGEAGYQQSFISGYRRDFINGQFT LKDLPKDWNKVIAPLMPKTDAKTPLKPMLYFIGKYEVTARQYAQVMSQAQSLASGEPAPACDAPTGMAGRLPKVKLSRFEAERFSAVYSAWLMKYHRELL PVSGRGSSADDGGLGFVRLPTEVEWEFAARGGHAVSRQDLEGRLFPRRVEGSDSDGPLGDYAVFNQVAGGTGQAARLMPIGTKLPNPIGLFDVIGNAAEM VQESFQLVHAGRRQGTYGGFVVKGGNYLEGEGTLFTGMRREYPLFAADGTEQSNETTGFRVAIGALSAPRSRYKELFAQWQKEGRLASLTDAIDDAQDPT KRLDSIIAASVDPKLQAELGLVNEELKRNVSLIAQQREEAAGNLIQSAALVAETIANYNIRLANLQKSRQQALDNKDEASAQLFDMAIANGRSALDGAVA IYIDNLATGTRYTDAVIQAQFQRIKEELDRKPVLGKSLVTRATLFVRHVGNYRKQQRADPATILKELLAASGQR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site