Pseudomonas fluorescens SBW25, PFLU2911 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCGCCGGATAAACGGGGCGGCAAGGTCTACGCGCTGCTAAGGGAAACCCTTAAGAAAACCGGCAAAGTTGCGCTGGCCAATGTGGTGCTGCACACCAA GCAGCACCTGGCGGCCTTGATGCCACTGGAATCGGCGCTGGTGTTGGTGATGCTGCGCTGGCCCGCCGAAGTCCGCAGCCTGGACGACCTGGAACTGGAC AGCGACGTGACCAAACCCAGCCTAGCCAAGGGCGAACTGGACATGGCCAAGCGCCTGGTAGAAGACATGAGCGCCGACTGGCAGCCGGATGACTACCGTG ACAGTTTCCAGGAAAAAATCATGGCGCTGGTGGCCAAGAAGGCCAAGGCCGGCAAGATCGAAGACGTGGAAACCAGCCAGGACAGCGAAGCGCGCAAGTC CGCCGACGTGATCGACCTGACGGAACTGCTCAAGCGCAGCCTGGCCGGCAAGCCCGCCAAGAAGCCGGCGGCGAAGAAATCCACCAAGGCCTCATGACCC
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| DNA Sequence for Gene |
>PFLU2911
|ligD
ATGCCAAAGCCCCTCAGCGAGTACAACCGTAAGCGCGACTTCGGCGTTACCGGCGAACCGGCAGGCCGTGCACCTGCCGGCAAACGCAACGCGTCGGCGC TGTCTTTTGTGATCCAGAAACATGACGCGCGCAACCTGCACTATGACTTTCGCCTGGAACTCGACGGCGTGCTGCTCAGTTGGGCGGTGCCCAAGGGCCC GAGCCTGGACCCGAGCCAAAAGCGCCTGGCCGTCCACGTGGAAGATCACCCCCTCAGCTATGGCAGCTTCGAAGGCAGTATTCCCGCCGGCCAATACGGC GCTGGCGACGTCATCGTGTGGGATCGCGGCATCTGGCAACCCCATGATGACCCGCGTAAGGCCTACGCCGCCGGCAAGCTCACATTCACCCTGGTCGGCG AGAAACTCTCCGGCGACTGGGCGCTGGTGCGCACCCGCCTGAAGGGCAGCGGCGACAAGGAACAATGGCTGTTGATCAAGGAAAAGGACGCGCAGGCGCG CCCGGCAGACGACTACGACATCGTTCAGGCTCAACCGGACAGCGTGGTCAGCGACGCCTCGGCAGGTAAATCCAACGTTAAATACAACGTTAAATACAAC GTTAAATACAACGCCAAGCCCAGCACCAAAGCTACGCGACAACAAGCAGCGGCAACCGCCCTCCCCGAACAATTCAACCCACAATTGGCCACGCTGGTGG ACCGCGCCCCCGAAGGCGACTGGCAGTACGAAATCAAGTTCGACGGTTACCGCATGCTCACGCGCATTCGTGACGGCGAGGTGCGCCTGTTCACCCGCAA CGGCCATGACTGGACCGAACGCCTGCCGCGCCAGGTCAAGGCCCTGCAGGCCCTCAAGCTCAAGGACAGCTGGCTCGACGGCGAGGTGGTCAGCCTGAAC GGCGACGGCCTGCCGGACTTCCAGGCACTGCAAAACGCCTTCGATATCGGCCGCAGCCTGGACATTGTCTACTACCTGTTCGATGCGCCATTCCTCAACG GCCAGGATCAACGCCAAGCGCCTGTCGAGGCACGCCGCGCCGCGCTCAAGGACGCGCTGGCCGTAAGCAGAAGCAAGTTGCTGCGGTTCTCCGAAGCCTT CACCGCCCACCCTCGCGATATCTTCGAAAGTGCCTGTGACCTCGCCCTGGAAGGCGTGATCGGTAAGCGCCTGGGCAGCCCCTATGTGTCGAGTCGCAGT GCCGATTGGATCAAGCTCAAATGCCGCCTGCGCCAGGAGTTCGTGATCGTCGGCTACACCCGGCCACAGGGTTCACGCAGTGGTTTCGGCGCGCTGTTGC TGGCGGTGAATGACGATGCCGGGCTGGTGTATGCCGGGCGTGTGGGCACAGGCTTTGATCACGCGTCACTGAAAGCGATTTACGCGCAACTCAAGCCCCT GGAACGCAAGACATCGCCGCTGGAAAAGCCGCTGAGCAGCGCCCAGGCCCGTGGCGTGCACTGGGTGGAGCCGACGTTGGTTGGCGAGGTGCAATTCGCC GAATGGACCCGGGAAGGTGTGGTCCGCCAGGCGGCATTCGTGGGGCTGCGCAGCGACAAACCGGCCGCCGAGATCATTCACGAGCTACCACGAACGGCCA ACGCCATGAAACCCGCGAAAAAAACCAGCGCTGCGGTAACGATCACCCACCCCGACCGGGTGATCGACCCGCAAAGCGGCACCCGGAAGCAGCAACTGGC ACAGTTCTACGACAGCATCAGCCAGTGGATCCTGCCCTTCCTGCGCCACCGCCCTGTTTCATTGCTGCGAGCGCCTGAAGGCATCGAAGGCGAGCCATTC TTCCAGAAACATTCAGAGCGCCTAGCCATTCCCAACATCAAGCACCTGGATCAGGCACTCGACCCAGGGCATGCGCGCCTGATGGAAATCGACAGCACCC GCGCGTTGATCGGTGCCGTACAAATGGGTGCCGTAGAATTTCACACCTGGGGCGCCACCTCAGACAAGATCGAAACCCCCGACCTGTTTGTGCTCGATCT CGACCCGGACCCGGCGCTGCCCTGGAAAGCCATGCTGGAAGCGGCGCAACTGACCCTGTCGGTGCTGGATGAACTGGGGCTGCAAGCGTTCGTCAAGACC AGCGGAGGCAAGGGACTGCACCTGGTCGTGCCACTGGCGCGCCGCGACGGTTGGGACACCGTCAAGGCGTTCGCCAAGGCCATCGCCCAGTTCATGACCG AGCAACTGCCCGAGCGTTTTACCGCGACGTCAGGGCCCAAAAACCGCGTCGGCAAGATCTTTATCGACTACCTGCGCAACGCGCGGGGCGCCAGCACCGT GGCGGCCTACTCCGTGCGGGCACGCCCTGGCCTGCCGGTGTCGGTGCCGATCAGCCGTGAGGAGTTGAAGGGTTTACGCAGCGCGCAGCAATGGACTGTC GCCAATGTGCAGCAGCGGTTGAACGGTTTGAAGGCTGATCCCTGGGCCGGGTATACCAACCGACAGAAACTCAGCCAGAAGATGTGGGACAAATTGGGCG CCCGTCCACCGGTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGCCGCCCAACGTGACGATCAGATCAGTAGGAAGATCGCTGCCAAACCAGCGAAGATCGCCCACTTTTCCAGGTAATAACGTGTACGGTTGCGCTTCTT CAGCTCTTTGCCACGCAGACGGATCTTGTACAGCCGCGTGAATGCGCGGTTGAGCCCACCGGTCTTGTCACCCTCATCATTGGGCGAACCCGCAGCGGCC ATGACCGTACGGCTGAACCAGCGATTGAAAGCCGCCGCCCAGCGGTACTTCATCGGACGCTCAATGTCGCAGAACAGGATGATGCGGTTCTGCTGTGTGG TGTTTTCCGCGTAGTGGATATAAGTCTCGTCGAACATCACCGGCTCGCCATCACGCCAGGAGTAGCTTTCGCCATCCACGTTGATGTAGCAACCTGGGTC ATTAGGCGTATCCAGGCCCAGGTGATAACGATACGAGCCGGCATACGGGTCACGGTGGCGTACCAATTTTGAGCCCGGCGGCAGCTCGGCAAACATCGCG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MPKPLSEYNRKRDFGVTGEPAGRAPAGKRNASALSFVIQKHDARNLHYDFRLELDGVLLSWAVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYG AGDVIVWDRGIWQPHDDPRKAYAAGKLTFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDAQARPADDYDIVQAQPDSVVSDASAGKSNVKYNVKYN VKYNAKPSTKATRQQAAATALPEQFNPQLATLVDRAPEGDWQYEIKFDGYRMLTRIRDGEVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLN GDGLPDFQALQNAFDIGRSLDIVYYLFDAPFLNGQDQRQAPVEARRAALKDALAVSRSKLLRFSEAFTAHPRDIFESACDLALEGVIGKRLGSPYVSSRS ADWIKLKCRLRQEFVIVGYTRPQGSRSGFGALLLAVNDDAGLVYAGRVGTGFDHASLKAIYAQLKPLERKTSPLEKPLSSAQARGVHWVEPTLVGEVQFA EWTREGVVRQAAFVGLRSDKPAAEIIHELPRTANAMKPAKKTSAAVTITHPDRVIDPQSGTRKQQLAQFYDSISQWILPFLRHRPVSLLRAPEGIEGEPF FQKHSERLAIPNIKHLDQALDPGHARLMEIDSTRALIGAVQMGAVEFHTWGATSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKT SGGKGLHLVVPLARRDGWDTVKAFAKAIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPISREELKGLRSAQQWTV ANVQQRLNGLKADPWAGYTNRQKLSQKMWDKLGARPPV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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