Pseudomonas fluorescens SBW25, PFLU0181 (gabT)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SBW25 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AACGCCGCCGTCGCGAAGGAAGAAACCTTCGGCCCACTGGCGCCGCTGTTCCGTTTCAAAGATGAAGCTGAAGTGATCGCGATGTCCAACGACACCGAGT TCGGCCTGGCTTCCTACTTCTATGCCCGCGACCTGGGCCGTGTGTTCCGTGTGGCTGAAGCCTTGGAATACGGCATGGTCGGCGTCAACACCGGGTTGAT CTCCAACGAAGTCGCGCCGTTCGGCGGTATCAAGGCCTCGGGCCTGGGCCGTGAAGGTTCCAAGTACGGGATCGAGGATTACCTGGAAATCAAATACCTC TGCCTGGGCATCTAAACCGCCCGGCAAGGCATTGCCGTAAACGCAGAGGGCACGAGAGCGCTGACCCTTTGCGTGTTTCACACCGTTATTCGTAGTGGCC GGGAAAGCTGTGGCAGTCGATCATCGCATGCTGCCGTAGTTGCCTCCCCGCCACGTATTCCTTGGACCACGCCACCCGATGAGTGGCGAATGAGGACTTT
|
|
| DNA Sequence for Gene |
>PFLU0181
|gabT
ATGAGCAAGACCAACGCATCCCTGATGAAACGCCGCGAAGCCGCTGTACCCCGTGGTGTTGGCCAGATTCACCCGATCTTCGCTGAATCCGCGAAGAACG CCACCGTGACCGACGTTGAAGGTCGCGAGTTCATCGACTTCGCCGGCGGTATCGCCGTGCTGAACACCGGCCACGTGCACCCGAAAATCATTGCCGCCGT GACCGAGCAACTGAACAAGCTGACCCACACCTGCTTCCAGGTACTGGCCTATGAGCCTTACGTGGAATTGTGCGAAAAAATCAACGCCAAGGTCCCAGGT GATTTCGCCAAGAAAACCCTGCTGGTCACCACCGGTTCCGAAGCCGTCGAAAACGCCGTGAAAATCGCCCGTGCCGCTACTGGCCGTGCCGGCGTGATCG CCTTCACCGGTGCCTACCACGGCCGCACCATGATGACACTGGGCCTTACCGGCAAAGTCGTGCCGTACTCGGCTGGCATGGGTCTGATGCCGGGTGGCGT ATTCCGCGCGCTGTTCCCGAACGAATTGCACGGTGTCAGCGACGATGACGCCATCGCCAGCATCGAACGCATCTTCAAAAACGATGCCGAGCCGCGTGAT ATCGCTGCCATCATCATCGAGCCGGTACAGGGCGAAGGCGGCTTCTACGTCGCGCCAAAATCCTTCATGAAGCGCCTGCGCGAGCTGTGCGACAAGCACG GCATCCTGCTGATCGCTGACGAAGTGCAAACCGGTGCCGGCCGTACCGGTACGTTCTTCGCCATGGAACAGATGGGCGTTGCCGCCGACCTGACCACCTT CGCCAAATCCATCGCCGGTGGCTTCCCGCTGGCCGGTGTGTGCGGCAAAGCCGAATACATGGACGCCATTGCACCCGGCGGCCTCGGCGGAACCTATGCC GGTAGCCCGATTGCTTGCGCCGCTGCGCTGGCGGTGATGGAAGTATTCGAAGAAGAGCACCTGCTGGACCGCTGCAAAGCTGTCGGTGAGCGCCTGGTGA CTGGCCTTAAAGCTATCCAGGCTAAATACCCGGTGATCGGCGAAGTACGTGCATTGGGCGCGATGATCGCGGTCGAACTGTTTGAAGATGGCGACAGCCA CAAGCCGAACGCCGCTGCTGTTGCCTCCGTGGTGGCCAAGGCGCGTGACAAGGGTCTGATCCTGCTGTCCTGCGGCACCTACGGCAACGTGTTGCGCGTA CTGGTCCCGCTGACCTCGCCGGACGAGCAGTTGGACAAGGGCCTGGCGATCATCGAAGAATGCTTCTCCGAGCTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGGAGGCTGAGCTGATCGACACAAAAAACCCGCTTCGGCGGGTTTTTTTATGCCGATCACTGCACATTCAGGCCTTGTTCGTTGTACGTAGGCGCCTGC ATTGTCTAAGGTTCCAGCATTGCCGACGGAGCGTGCAGGATGATTGCTGTTGATTTACCCGCTGTACCGCGCGTACTAATTGCCGAAGCAGACCCCTGGT CGCGGGACCTGCTCAAGCAAGTGCTGTTGAATGTGCGCTGCGATGCGCGGCTGGATGTGTGTGCCGACGGGCAACAAGCGGCCACGCTGTTGCGCGAAAA GCCCTACGACCTGATCCTGGCGGATTGGGAGCTGCCGGGCATCGATGGGCTGAGCCTGTTGCGCAACGTGCGCCAGAAACGCCGCTCACCCGCGCTGCCG TTCATTCTGCTGAGCAGTCGCAACGACAGCGCCAGCGTACGCGAAGCCTTGCCTTTGGCGCCCACGGCGTATTTGACCAAACCCCTGAACATGGAAGGCC
|
|
| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSKTNASLMKRREAAVPRGVGQIHPIFAESAKNATVTDVEGREFIDFAGGIAVLNTGHVHPKIIAAVTEQLNKLTHTCFQVLAYEPYVELCEKINAKVPG DFAKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGVFRALFPNELHGVSDDDAIASIERIFKNDAEPRD IAAIIIEPVQGEGGFYVAPKSFMKRLRELCDKHGILLIADEVQTGAGRTGTFFAMEQMGVAADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPIACAAALAVMEVFEEEHLLDRCKAVGERLVTGLKAIQAKYPVIGEVRALGAMIAVELFEDGDSHKPNAAAVASVVAKARDKGLILLSCGTYGNVLRV LVPLTSPDEQLDKGLAIIEECFSEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|