Strain | Pseudomonas aeruginosa 39016 chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCGAGTACGCCCTGCACCAGGCGCTCGGCGACTTCCTCGAAGGCCGCACCACATTGATCGTGGCTCATCGGCTGTCGGCGGTGAAGCAGGCCGACCGGGT CCTGGTCTTCGATGGCGGGCATATCGCCGAAGACGGCGACCACCAGCAACTGATCGCCGAAGGCGGCCTCTACGCCCGGCTCTATGGACATCTGCAACAG ATGTGAGGCGCCAGGCTGTCGCCTGGCGGTTTTTCTCGTATATTCCATATAAGACATCCGGTTTTTATTGGCTGCGGCAATAAAAAACGCTGTCTGTTCC GCCAGGTGCAGGGCAGGTTCGGCAAACAGCCACTAAACTCCTACTGTTTGCCGGGTGTCCGCCTCCTCCAGCGTCGTGGCTGCCGGCAGGCAAGGCCTCG GGAGTTCTGCGACGGGATCTTGAGCGGCCGACAGGTGATGCAGTCAGGGGTGACGGAGACGGCACCCGATCGCTTAGCGCCAGTTTGAATGGTAGATGGA
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DNA Sequence for Gene |
>PA39016_000110035
ATGAGGCAGAACCGGACTCTCGACAAGCCCCGCCTGCTCGGCCTGGTATGGCCCTTCATCGTCGTGGTGCTGTTGCAGGCCATGCTGGCGGGCGGCAGTC TCTACGTCCTCTCCGCGGTGCGCAGCTATGTCGGCGGCGAAAGCCTCTGGTCGAAGGGCCAGAAGGATGCCATCTACTATCTCACCCTCTATGCCGACTC ACGCGCCGACGAAGACTTCCGCCGCTACGAGGAGGCCATCGCGATCCCCCTCGGCGACCGCGAGATGCGCCTTGCCCTGGACCAGCCCGACCCGGACATC GAGGCGGCCCGCCAGGGCATCCTCAAGGGCGGCAACCATGCCGACGACGTTACCGCGATCATCTGGCTGTACCGCAACTTCCACGACTTCAGTTACTTCG AGCGCGCCATCGAGCTGTGGCTGGTGGGCGACAAGTACGTCATGGAACTGATCGACGTCGCCGGCAAGATGCGCGCGGGCATCGGCACCGGGCAGGCCAG TGCCGAGCAGGTGCAACAGTGGAAGACCGAGATCCACGCGATCAACGAGAAGGTCACGCCGGCGGCCAAGGCCTTCAGCGACGCCCTCGGCGAGGGCTCG CGGGCCTTGCTCAGGCTGCTGCTGGTGGCCAACCTGACCACCGCCAGCGTGCTCATCCTCCTGGCGTTCCTGCGTACCCGGCAGCAACTGATGCAGCGCC AGGAAGTGGAGAACGCCCTCGATGCCGAGCGCGAACGGGCCCAGATCACCCTGGCCTCGATCGGCGACGGAGTGATCACCGCCGACACCCAGGGGGGCAT TTCCTACCTCAACCCGGCCGCCGAGCAGATGACCAACTGGACGCTGGACAAGGCCCGCGGCCTGCCCCTGGCGTCGCTGTTCCGGATCGTCGACGAAAGC TCGCGGGAGGAGGGCATGCTGCTGATCGAGCAGATCCTCAGCGGCGAGATCGACGGCGGCCGCGAGCATTCCAAGCTGGTCCTGCGCCACGACGGCAGCA GCGTGCCGGTGACCCTGGTGGGCGCGCCGATCCATCGCGGCGGCGAGATCACCGGGGTGGTCCTGTTGCTTCACGACATGACCCGCGAGCGCCAGTACAT GGCGCGCCTGTCCTGGCAGGCGACCCACGATGCGTTGACCGGGCTGACCAACCGCCGCGAGTTCGAGTATCGCCTGCAGATAGCGCTGGAACGCCTGGAG CGCAACAGCGGGCGGCACGCCCTGATGTTCCTCGACCTGGACCAGTTCAAGCTGGTCAACGACACCTGCGGCCACGCCGCCGGCGACGAACTGCTGCGCC AGGTCTGCACCCTGCTGCAACAAGGCTTGCGCGAGGGCGACACGCTGGCGCGGCTGGGCGGCGACGAGTTCGGCATCCTGCTGGAGAACTGCCCGGCGGA AAAAGCCGTGGAGATCGCCGACCATCTGCGCAAGACGGTCCAGGACCTGCACTTCACCTGGAGCGGGCAGCCGTTCAACTGCACCGTCAGCGTCGGCCTG GTGCACCTGCTGCCGGGTATCTCGACCCTCGAGGAGGCACTGCGCTCCGCCGACATGGCCTGCTACATGGCCAAGGAAAAGGGGCGCAATCGGGTCCAGG TGTTCCATCAGGACGACGTCGAACTGTCGATGCGCTTCGGCGAGATGACCTGGGTCCAGCGCATCCACCTGGCGCTGGAGGAAGACCGCTTCAGCCTCTA TGCCCAGCCCATCGTGCCGCTGGGCGAAGGCGCGGAGGAGGGCTTGCACGTCGAACTGCTGCTGCGCCTGCGCGACGAGGGCGGGCGCCTGGTGCCGCCG CTGAGCTTCATACCCGCCGCCGAGCGCTATGGCCTGATGACGCTGATCGACCGCTGGGTGGTGGAGAATGCCTTCCGCACCCTCGTCGAGCGCGCCCAGG ACCCTCGCGCCGAGCCGATCGGCACCTGCGCCATCAACCTCTCCGGCGCGACCATCGGCGACGAGTCGTTCCTGCAGTTCCTCACCGAGCTGTTCGCCCG TTACCGCATTCCGCCGCAGACGATCTGCTTCGAGGTCACCGAAACCGTGGCGGTTGCCAACCTGGCCAGCGCCATCCGCTTCATCAACGAGCTCAAGGAC ACCGGTTGTCGTTTCTCCCTGGACGATTTCTGCGCCGGCATGTCGTCCTTCATCTACCTCAAGCACCTGCCGGTGGATTACCTGAAGATCGATGGCAGCT TCGTCAAGGACATGCTCGAGGATCCCATCGATCGCGCTATGGTCCAGGTGATCAACCATATCGGCCACGTGATGGGCAAACGTACCATCGCCGAGTTCGT CGAGACCGTCGAAGTGATGGAGGCGCTGCGCGAGATCGGCATCGACTATGCCCAGGGCCTGGCCATCGGCGCGCCCCTGCCGTTCAGTCGCCAGCCTCCG GGCGCAGGGCTGGATGCCCAGGGCCTGTGGCCGAGCCTCGGACAGAACCTCCGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTGACCGCGGAGCGAAGAAAGAGTAGTTTCGCTGCTATGAGGCCGTTGCCGAGAAGAAGAGAAGGGAGACGGGTGTGAGCGAGTTCTTTGACCGTACGGG CCCCTTGCAGGAGGCGGGAAGCTATCCGCAGTGGGCGCAGCAACTGATCGTCGACTGCCAGGCGAGCAAGGACCGGGTTTCCGGCCACGAGCTGTACCGG CGCATGCGCGACGCCGAGCTGAGCCCGGCGCTGATGCGCCTGTACCTGATCGGCGGCTGGCCGGTGGTCGAGCAGTTCCCCTTGTACATGTCGCAGAACC TGCTGAAGACCCGTTTCGCCCGCCATCCCGGCGAAGACATGGCGCGCCGCTGGCTGATGCGCAACATTCGGGTCGAACTCAACCACGCCGACTACTGGCT GCACTGGGCCGAGGCCCACGGCGTGAGCCTGGCCGAGATCCAGGCGCAAGACGTGCCGGCCGAACTGCACGCGCTCAGCCACTGGTGCTGGCACACCTGC
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Amino Acid Sequence |
>membrane protein
MRQNRTLDKPRLLGLVWPFIVVVLLQAMLAGGSLYVLSAVRSYVGGESLWSKGQKDAIYYLTLYADSRADEDFRRYEEAIAIPLGDREMRLALDQPDPDI EAARQGILKGGNHADDVTAIIWLYRNFHDFSYFERAIELWLVGDKYVMELIDVAGKMRAGIGTGQASAEQVQQWKTEIHAINEKVTPAAKAFSDALGEGS RALLRLLLVANLTTASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPAAEQMTNWTLDKARGLPLASLFRIVDES SREEGMLLIEQILSGEIDGGREHSKLVLRHDGSSVPVTLVGAPIHRGGEITGVVLLLHDMTRERQYMARLSWQATHDALTGLTNRREFEYRLQIALERLE RNSGRHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGL VHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQPIVPLGEGAEEGLHVELLLRLRDEGGRLVPP LSFIPAAERYGLMTLIDRWVVENAFRTLVERAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLASAIRFINELKD TGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQVINHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFSRQPP GAGLDAQGLWPSLGQNLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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