Pseudomonas aeruginosa PAO1, PA3989 (holA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AACCCTGGAAAACAGCGGCGTGAAGGTCACCAGCAACGCGCCCTACCACCTGGTGCTGGTCCGCGAGGACAACCAGCAGCGCACCGTCAGCTACACCGGT TCCGCGCGCGGCGCGGAGTTCGAGCTGACCAACACGATCAACTACGAGATCGTCGGCGCCAACGACCTGGTCCTGATGAGCAACCAGGTACAGGTGCAGA AGGTCTACGTGCACGACGAAAACAACCTGATCGGTTCCGACCAGGAAGCCGCGCAGCTGCGCAGCGAGATGCGGCGCGACCTGATCCAGCAGTTGTCCAT GCGCCTCCAGGCGCTGACCCCGGCGCAACTCGACGAAGCCCAGCGCCAGGCAGAAGCCAAGGCCAAGGCGGAAGCCGAAGCCCTGCGCGCCGCCGACGAG GCGGAGCGCCAGCGCCGCGCCGCCGAGCCGCAGCAGTCGCCGATCGAGTTCCCCACCCCGTGATGCCCCGGGGCCGGTTTCGCCGGCCCCGTCTTCTCCT
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| DNA Sequence for Gene |
>PA3989
|holA
ATGAAGCTGACTCCCGCGCAACTCGCCAAGCACCTCCAGGGCCCCCTGGCGCCCGTCTATGTCGTCAGCGGCGATGAACCGCTGCTCTGCCAGGAAGCCT GCGATGCCATTCGCCAGGCCTGCCGCGAGCGCGACTTCGGCGAGCGCCAGGTATTCAATGCCGAAGCCAACTTCGATTGGGGCTTGCTGCTGGAGGCCGG CGCCAGCCTGTCGCTGTTCGCCGAGAAGCGCCTGATCGAACTGCGCCTGCCCTCCGGCAAGCCCGGCGACAAAGGCGCGGCGATTCTCCAGGAATACCTG CAACGGCCGCCGGAAGACACCGTGCTCCTGCTCGGTCTGCCCAAGCTCGATGGCAGCACGCAGAAGACCAAGTGGGCCAAGGCCCTGATCGATGGCAACG CCGCGCAGTTCATCCAGGTCTGGCCGGTCGACGTCCACCAGTTGCCGCAGTGGATTCGCCAGCGCCTGTCCCAGGCTGGCCTGTCCGCCAGCCCCGAAGC CCTGGAGCTGATCGCCGCGCGCGTGGAAGGCAACCTGCTCGCCGCCGCCCAGGAAATCGAAAAGCTCAAGCTGCTCGCCGAGGGCAACCAGATCGACGCC GCCACCGTACAGGCCGCGGTCGCCGACAGCGCACGCTTCGATGTCTTCGGCCTGATCGACGCTGCCCTTGGCGGTGAAGCGGCCCACGCCCTGCGCATCC TGGAAGGACTGCGCGGCGAAGGCATCGAGCCGCCGGTGATCCTCTGGGGCCTGGCCCGCGAGATCCGCCTGCTGGCTGGCCTGTCCCAGCAATACGGCCA GGGCATCCCGCTGGAGAAAGCCTTCGCCCAGGCGCGTCCGCCGGTCTGGGACAAGCGCCGTCCGCTGCTGACCCGTGCCCTGCAACGCCACTCCAGCAGC CGCTGGAACCAGATGCTGAGGGATGCCCAGTTGATCGACGCGCAGATCAAGGGACAGGCACCCGGCAGCCCCTGGAGCGGTCTCTCGCTTCTCGCCCTGA GCCTCGCCGGCCAGCGCCTCGGCCTGCCGGCAGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGCGCAACCGGCACTGGACAATCCGCGGCGACAGGCAGATGATGCGCGCGCTGGCGAGCGCCAGCCCGATCACCTTCGAGGACCTATGCCATGGCAAAG AAAAGCAAGCGGCCGAACAAGGCCAAATCCCTGGTCGCCCAGCCACTGTTCCGCAGCCGCCAGGAACAGGCGAAGAAAGGCAAAGGCAGCTACCGCCGCG AAGCCTCCCGTAACTGGGAGGCTTCTTTCGTTATGGCGGCCTGAAACAGCCGCTGGTCCATCCTCCCGCAACGCCCTCCTCACCCACGCGCCCCGCCTAC CCCGCCCGAAGCCCGTCGACAAGACCAACCCCACCGCCAGCCTGCCGCCCATGGGCACACTATCGTCGGCGCGCAAGCCCTGGCCCCATCGGGTTGGGCG AAAAGCCAATGGTTCCTCCATCATGATCCGCGGCCTCGACATCCCGCGCGGCCGACTGGCAACCCTCTGGCCATTGCAGCGCACGAACCAGGCTCGGGCG
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| Amino Acid Sequence |
>DNA polymerase III, delta subunit
MKLTPAQLAKHLQGPLAPVYVVSGDEPLLCQEACDAIRQACRERDFGERQVFNAEANFDWGLLLEAGASLSLFAEKRLIELRLPSGKPGDKGAAILQEYL QRPPEDTVLLLGLPKLDGSTQKTKWAKALIDGNAAQFIQVWPVDVHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAEGNQIDA ATVQAAVADSARFDVFGLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLAREIRLLAGLSQQYGQGIPLEKAFAQARPPVWDKRRPLLTRALQRHSSS RWNQMLRDAQLIDAQIKGQAPGSPWSGLSLLALSLAGQRLGLPAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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