Pseudomonas sp. URIL14HWK12:I7, H032_RS0107780
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00014.14_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTCGGATTTTTTTTGAGTCTGGCACTCACCGGTTGCTCGCTTTTTGCCCCCAGCGTCGACCTGGGCAGCCTGACCCTGGACGTCGCGCCGCGTGCCAAT GACGACACGCCGATCGCCGTGGACTTCATCGCGGTGAACGACCCGGACCTGCTCAAGCAGCTGTCGGGCATCACCGCCAGCCAGTGGTTCGCCGAGCGCG AACAGTTTCAGCGCGACTATCGTCAACTCATGTCGGTGTGGGGGCTGGAGCTGGTTCCGGGGCAATTCATCGACCGCCAACCCTTCCCGCTGGAGGGGCG GCGCGCCGCTGGACTTTTGGTCTTCGCCAGCTATAACACTCCCGGAGCCCACCGGCTTCGGCTGGACGATCAGCGCGAGGCCTGGCTGAAGTTCGACAGT CGCGAGATGACCCTCGTGAATGACGGGGCTCGATGACAGCCAGCCTTGAGTGACCGCGGGCCGCCATGCGCGGCGACATTGGGATGTCGAAGGGAGTCGT
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| DNA Sequence for Gene |
>H032_RS0107780
ATGAGTCTGTTACCTGACGCGGTGTGCTGGCATGAGGGGATGCAATTGCTGCCCCAGCATTTTCAATTGCAAGGGCTGCGCGCCGAGGCGCTGGCCGCGT ATTTTGCCGGGGCCTGCAATCCTTGGTTCTGGGGTGTCAGCCAGTTGGAAGTCGATCCTTCGGCCCTCAGCGCCGGCCAGGTGCGGCTGCTGCAACTGCA AGGCACCTTGCCGGACGGCTTGCCGGTCAACCTGCAGGCCGGTGTCGGGCCGACCCTGGAGCTGGACATCGGCGAGGCGATCGACAAGACCGACGACGCC ACTGTGACTGTGTACCTGGCCGTCAGCCCACTGTGGCGCGCCGGGCAATTGGTGCCGCTCAAGGGGCGCCTGCAATCGGTGGTCGGCGAGGCGTTGCCGG ACCTCACCAGCGGTTCATTTCCCGAGTCGATCACCGTCTGGCGACCCAACCCGAGGTTGTGTACGCAACTGAGCAAGGCCGATTCGATCTGCCTGCCGCT GTTGCGCATCCGCAAGGAGGGCGGTGGCTTCTGGCGCGTGCCCTACACCCCGCCGACACCGATCCTGTTGCCGGAGTCGGCCCTCGGTCGACGGGTCGCC GGAGTGTGCGCCCGGGCCCGGGAGAAGTGCATGTTTCTCGCCGGTCGCTTGCGCCAGGCCCAGGCGGCCGGCAACCAGGACGATGCCGTGGAGATCCGCC GGCAATTGACCGCCTTGTGGGCGCGCTTGCCGGAAGTCGAGGGCGCGCTGAACACCCAGGTGGCGACGCCCCAGGCGCTCTACGGTTTGCTGCTGGGGTT GGCCGGGAGCTGGTCGGCCCTCGATCCACTGGCGGGCGTCCCGGCCTTCGCACCGCTGGATTTTCTCGAATTGCAGCGCGGCTACGAGCCGTTGCTCGAC TGGCTGGAAACCACCCTGGAACTGGTTCGTGCCGGCTATCGCAGCCTGGCCTTCGAACGCAATGAGCAGGTCTTCTCGATCCAGTTGCCTGACGACCAAC CGGACCAACGCCTGGTGATCGGCCTGCGCATGCCCAACGGCGCCAGCGAGCAGGCGGCGGGCGAGTGGTTGCGCGGGGCGATCATCGCGTCGGCGCGGCA TATCCCGCTGCTGAGCCGACAGCGCATGAGCGGTCTGCCTCACCAGGCCATGAGCCGCAACGAACAGGTGGCCTACAGCGTGGGCGACGACACCCGTTTG TTTGTGGTGGCGGCCAGCGGGCAATGGTTCGACGCGCAATTGCCGCTGCACATCGTGGCGCCGGCCTCGGCCCAGGCCAGCAGCCCGTGGCAAGTGGTGT TGTTCGTGGCGCAAGCCAGTGAAAGTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCAAAAGGGGAGTCGTATGCCTGATGGAAGTGGCGGGGCGGTTCGGAGTCTGCATGAGGCGCCGCTGAGCAGCGCTTTTCGCCAGGCCTGGCTGAAGT GGTCCCAGGAATGGCAAGACTTGCCCAAGGACAGCGACCCTGCGGCATTGGTCAATCGGGTGGTGGAGTTTTCCGGGCGCAGCGCCCAGCGTCTGTGGCG GGTGGCCTTCGCCACCGTCGGCGATGCCGCTACCGAGCAGGTCAAGTCGCTGGTCTATGCCTTCGTGGCGCTGGTGGACGAAACCTTGCTGTTCAGCCCC TGGCCCGGACAACTGGCCTGGCAGCAGCACCCCCTCGAATCACGCATGTATGCCAGTCGCCAGGCCGGCGAGCGCTTGCCGGCGGCGATCAAGAAACTGC TGGACGAGCAGATGCCCGGCACCCGGGACCTGGCGAATGTCTACCTGCAATGCCTGATCCTCGGGTTCCAGGGCCGGTTGCGCGGCGAGCCTGGCCAGGT
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| Amino Acid Sequence |
>type VI secretion protein
MSLLPDAVCWHEGMQLLPQHFQLQGLRAEALAAYFAGACNPWFWGVSQLEVDPSALSAGQVRLLQLQGTLPDGLPVNLQAGVGPTLELDIGEAIDKTDDA TVTVYLAVSPLWRAGQLVPLKGRLQSVVGEALPDLTSGSFPESITVWRPNPRLCTQLSKADSICLPLLRIRKEGGGFWRVPYTPPTPILLPESALGRRVA GVCARAREKCMFLAGRLRQAQAAGNQDDAVEIRRQLTALWARLPEVEGALNTQVATPQALYGLLLGLAGSWSALDPLAGVPAFAPLDFLELQRGYEPLLD WLETTLELVRAGYRSLAFERNEQVFSIQLPDDQPDQRLVIGLRMPNGASEQAAGEWLRGAIIASARHIPLLSRQRMSGLPHQAMSRNEQVAYSVGDDTRL FVVAASGQWFDAQLPLHIVAPASAQASSPWQVVLFVAQASESA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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