Pseudomonas sp. LAMO17WK12:I2, D883_RS0129305

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 213 247 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 271 391 1.1E-32
SMART SM00091 pas_2 IPR000014 PAS domain 278 345 27.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 286 396 1.13E-15
CDD cd00130 PAS IPR000014 PAS domain 290 392 5.31935E-6
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 304 401 1.8E-6
Pfam PF08447 PAS fold IPR013655 PAS fold-3 305 388 2.4E-19
SMART SM00086 pac_2 IPR001610 PAC motif 352 395 1.6E-6
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 381 952 0.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 399 531 6.1E-28
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 400 523 5.1E-15
SMART SM00091 pas_2 IPR000014 PAS domain 403 469 2.5E-6
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 408 515 4.35E-23
Pfam PF08448 PAS fold IPR013656 PAS fold-4 409 519 2.5E-11
CDD cd00130 PAS IPR000014 PAS domain 412 514 1.95441E-8
SMART SM00086 pac_2 IPR001610 PAC motif 475 517 0.0055
SMART SM00267 duf1_3 IPR000160 GGDEF domain 517 689 3.0E-52
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 527 686 1.4E-30
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 528 684 8.0E-42
CDD cd01949 GGDEF IPR000160 GGDEF domain 529 687 1.37099E-51
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 532 697 6.8E-49
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 533 691 5.02E-43
SMART SM00052 duf2_2 IPR001633 EAL domain 699 945 8.9E-122
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 699 955 1.5E-104
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 700 955 2.0E-94
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 704 952 1.96E-92
CDD cd01948 EAL IPR001633 EAL domain 705 944 9.96733E-114
Pfam PF00563 EAL domain IPR001633 EAL domain 705 940 1.2E-74

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.