Motif View

Internal ID 17656352
Source Database TransTermHP TERM 1181
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1181
Sequence GCCCACCTTCGCAGGTGGGC
Look for more occurrences
Start 5086890
End 5086909
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TACAGAAACGAAAAA(5' tail) GCCCACCT(5' stem) TCGC(loop) AGGTGGGC(3' stem) TTTTTCGTCTTGAAT(3' tail). Confidence: 100. opp_overlap 5086890, overlap 5086881

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685