Motif View

Internal ID 17656180
Source Database TransTermHP TERM 903
Feature Type terminator
Name
Rho-independent transcription terminator TERM 903
Sequence CCCCGCCTTGTGCGGGG
Look for more occurrences
Start 3952024
End 3952040
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGACAAAAAAGAAA(5' tail) CCCCGC(5' stem) ACAAG(loop) GCGGGG(3' stem) CTCTTCGTCGGATGC(3' tail). Confidence: 100. opp_overlap 3952023 3952021, overlap 3952020

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685