Motif View

Internal ID 17656153
Source Database TransTermHP TERM 855
Feature Type terminator
Name
Rho-independent transcription terminator TERM 855
Sequence GCCCCTGCCGTATCCGCGGCAGGGGC
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Start 3802506
End 3802531
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCGGAAAGCAGAAA(5' tail) GCCCCTGCCGC(5' stem) GGAT(loop) ACGGCAGGGGC(3' stem) TTTCTTCGCCTGGCG(3' tail). Confidence: 100. opp_overlap 3802506, overlap 3802502 3802499

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685